Education
Stanford University, Stanford, CA
Ph.D. in Biomedical Informatics
The Johns Hopkins University
M.S. in Bioinformatics
University of Southern California
B.S. in Computer Science
Honors: Cum Laude
In progress
2006
2003
Awards
William R. Hewlett Fellowship (a Stanford Graduate Fellowship)
Next-Gen Tomorrow's PI, Genome Technology Magazine
Student Travel Award, Pacific Symposium on Biocomputing
National Institute of Biomedical Imaging and Bioengineering Fellowship
National Library of Medicine Training Grant, Stanford University
National Institutes of Health Post baccalaureate IRTA
Presidential Scholar, University of Southern California
Thematic Options Program, University of Southern California
Resident Honors Program, University of Southern California
June 2008 (3 years)
Jan. 2008
Jan. 2008
Oct. 2007 (1 year)
Sept. 2006 (3 years)
Aug. 2005 - Aug. 2006
Aug. 1999 - May 2003
Aug. 1999 - May 2001
Aug. 1999 - May 2000
Refereed Conference Publications
Zimmerman NH, Patel C, Chen DP. CHMP: A collaborative medical history portal. Accepted AMIA 2008.
Dudley J, Chen DP, Butte AJ. Using SNOMED-CT for translational genomics data integration. Accepted KR-MED 2008.
Chen DP, Weber SC, Constantinou PS, Ferris TA, Lowe HJ, Butte AJ. Novel integration of hospital electronic medical records and gene expression measurements to identify genetic markers of maturation. Pac Symp Biocomput. 2008;:243-54.
Chen DP, Weber SC, Constantinou PS, Ferris TA, Lowe HJ, Butte AJ. Clinical arrays of laboratory measures, or "clinarrays", built from an electronic health record enable disease subtyping by severity. AMIA Annu Symp Proc. 2007;: In press.
Chen D, Yao J. Improved livewire methods for segmentation on low contrast and noisy images. Proceedings of SPIE 2007 Mar;6512.
Yao J, Chen D, Lu W, Premkumar A. Uterine fibroid segmentation and volume measurement on MRI. Proceedings of SPIE 2006 Mar; 6413.
Posters
Chen DP, Butte AG. Integration of clinical and gene expression data to create genome-clinome networks. National Library of Medicine Informatics Training Conference. National Library of Medicine. Bethesda, MD. July 7-9, 2008.
Chen DP, Butte AJ. Integration of hospital electronic medical records and gene expression measurements to find aging related biomarkers and associated genes. NSF Biomedical Informatics Workshop. Menucha, OR. December 3-5, 2007.
Chen DP, Butte AJ. Using clinical laboratory data and gene expression measurements to infer gene function. National Library of Medicine Informatics Training Conference. Stanford University, Stanford, CA. June 26-27, 2007.
Chen DP, Yao J. The measurement and segmentation of uterine fibroid using magnetic resonance imaging. National Institutes of Health Summer Poster Session. National Institutes of Health, Bethesda, MD. August 2005.
Teaching Experience
Stanford Institutes of Medicine Summer Research Program Mentor. June 2008 - August 2008
Teaching Assistant, Representations and Algorithms in Computational Molecular biology
(BIOMEDIN 214), Stanford University. April 2008 - June 2008
Teaching Assistant, Translational Biomedical Informatics (BIOMEDIN 217), Stanford University. January 2008 - March 2008
Related Experience
National Institutes of Health - Department of Diagnostic Radiology, Bethesda, MD
Post baccalaureate IRTA Fellow
August 2005 - August 2006
Developed a hybrid method of image segmentation by combining level sets and livewire to generate more accurate boundaries for noisy, inhomogeneous, and gapped boundaries.
National Institutes of Health - Department of Diagnostic Radiology, Bethesda, MD
Summer Intern
May 2005 - August 2006
Developed a semi-automatic segmentation method used by radiology technicians for the purpose of acquiring volumetric information of uterine leiomyomas. Developed software to concurrently register and visualize current anatomic pointer position in axial, coronal, and sagittal slices of MRI scans.
Rhodes Publications, Los Angeles, CA
Web Programmer
February 2003 - December 2004
Developed e-commerce based employment and retail sites. Managed internal computer systems: networking, database administration, and systems administration.
Memberships
American Medical Informatics Association
Download PDF version of my CV:
| cv_david_chen.pdf | |
| File Size: | 46 kb |
| File Type: | |